Signal Peptide Database

Signal Peptide Database - Viruses

Entry Details

4732

Source Database

UniProtKB/Swiss-Prot

UniProtKB/Swiss-Prot Accession Number

Q8JJX0 (Created: 2006-05-30 Updated: 2008-11-25)

UniProtKB/Swiss-Prot Entry Name

POLS_SPDV

Protein Name

Structural polyprotein

Gene

Organism Scientific

Salmon pancreas disease virus

Organism Common

SPDV

Lineage

Viruses
  ssRNA positive-strand viruses, no DNA stage
    Togaviridae
      Alphavirus

Protein Length [aa]

1320

Protein Mass [Da]

142895

Features

TypeDescriptionStatusStartEnd
signal peptide   Not cleaved   potential   283   298
chain   Capsid protein   by similarity   1   282
chain   p62   by similarity   283   791
chain   E3 protein   by similarity   283   353
chain   E2 envelope glycoprotein   by similarity   354   791
chain   6K protein   by similarity   792   859
chain   E1 envelope glycoprotein   by similarity   860   1320
disulfide bond      by similarity   909   984
disulfide bond      by similarity   922   964
disulfide bond      by similarity   923   966
disulfide bond      by similarity   928   948
disulfide bond      by similarity   1134   1146
disulfide bond      by similarity   1176   1252
disulfide bond      by similarity   1181   1256
disulfide bond      by similarity   1203   1246
transmembrane region      potential   735   755
transmembrane region      potential   808   828
transmembrane region      potential   837   857
transmembrane region      potential   1287   1307
topological domain   Extracellular   potential   1   734
topological domain   Cytoplasmic   potential   756   791
topological domain   Extracellular   potential   792   807
topological domain   Cytoplasmic   potential   829   836
topological domain   Extracellular   potential   858   859
topological domain   Extracellular   potential   860   1286
topological domain   Cytoplasmic   potential   1308   1320
domain   Peptidase S3      127   282
region of interest   Ribosome-binding   by similarity   103   121
region of interest   Transient transmembrane before p62-6K protein processing   potential   760   784
region of interest   E1 fusion peptide loop   by similarity   954   971
site   Cleavage; by capsid protein   by similarity   282   283
site   Cleavage; by host signal peptidase   by similarity   353   354
site   Cleavage; by host signal peptidase   by similarity   791   792
site   Cleavage; by host signal peptidase   by similarity   859   860
active site   Charge relay system   by similarity   160   160
active site   Charge relay system   by similarity   166   166
active site   Charge relay system   by similarity   233   233
lipid moiety-binding region   S-palmitoyl cysteine; by host   by similarity   784   784
lipid moiety-binding region   S-palmitoyl cysteine; by host   by similarity   785   785
lipid moiety-binding region   S-stearoyl cysteine; by host   by similarity   1310   1310

SP Length

----+----1----+----2----+----3----+----4----+----5

Signal Peptide

TRAPALLLLPMVIVCT

Sequence

MFPMQFTNSAYRQMEPMFAPGSRGQVQPYRPRTKRRQEPQVGNAAITALA
NQMSALQLQVAGLAGQARVDRRGPRRVQKNKQKKKNSSNGEKPKEKKKKQ
KQQEKKGSGGEKVKKTRNRPGKEVRISVKCARQSTFPVYHEGAISGYAVL
IGSRVFKPAHVKGKIDHPELADIKFQVAEDMDLEAAAYPKSMRDQAAEPA
TMMDRVYNWEYGTIRVEDNVIIDASGRGKPGDSGRAITDNSGKVVGIVLG
GGPDGRRTRLSVIGFDKKMKAREIAYSDAIPWTRAPALLLLPMVIVCTYN
SNTFDCSKPSCQDCCITAEPEKAMTMLKDNLNDPNYWDLLIAVTTCGSAR
RKRAVSTSPAAFYDTQILAAHAAASPYRAYCPDCDGTACISPIAIDEVVS
SGSDHVLRMRVGSQSGVTAKGGAAGETSLRYLGRDGKVHAADNTRLVVRT
TAKCDVLQATGHYILANCPVGQSLTVAATLDGTRHQCTTVFEHQVTEKFT
RERSKGHHLSDMTKKCTRFSTTPKKSALYLVDVYDALPISVEISTVVTCS
DSQCTVRVPPGTTVKFDKKCKSADSATVTFTSDSQTFTCEEPVLTAASIT
QGKPHLRSAMLPSGGKEVKARIPFPFPPETATCRVSVAPLPSITYEESDV
LLAGTAKYPVLLTTRNLGFHSNATSEWIQGKYLRRIPVTPQGIELTWGNN
APMHFWSSVRYASGDADAYPWELLVYHTKHHPEYAWAFVGVACGLLAIAA
CMFACACSRVRYSLVANTFNSNPPPLTALTAALCCIPGARADQPYLDIIA
YLWTNSKVAFGLQFAAPVACVLIITYALRHCRLCCKSFLGVRGWSALLVI
LAYVQSCKSYEHTVVVPMDPRAPSYEAVINRNGYDPLKLTISVNFTVISP
TTALEYWTCAGVPIVEPPHVGCCTSVSCPSDLSTLHAFTGKAVSDVHCDV
HTNVYPLLWGAAHCFCSTENTQVSAVAATVSEFCAQDSERAEAFSVHSSS
VTAEVLVTLGEVVTAVHVYVDGVTSARGTDLKIVAGPITTDYSPFDRKVV
RIGEEVYNYDWPPYGAGRPGTFGDIQARSTNYVKPNDLYGDIGIEVLQPT
NDHVHVAYTYTTSGLLRWLQDAPKPLSVTAPHGCKISANPLLALDCGVGA
VPMSINIPDAKFTRKLKDPKPSALKCVVDSCEYGVDYGGAATITYEGHEA
GKCGIHSLTPGVPLRTSVVEVVAGANTVKTTFSSPTPEVALEVEICSAIV
KCAGECTPPKEHVVATRPRHGSDPGGYISGPAMRWAGGIVGTLVVLFLIL
AVIYCVVKKCRSKRIRIVKS

Original

----+----1----+----2----+----3----+----4----+----5

Hydropathies

Signal Peptide Website